Reheader a VCF file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
VCF/BCF file
*.{vcf.gz,vcf,bcf}
header
New header to add to the VCF
*.{header.txt}
samples
File containing sample names to update (one sample per line)
*.{samples.txt}
meta2
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fai
Fasta index to update header sequences with
*.{fai}
*.{vcf,vcf.gz,bcf,bcf.gz}
VCF with updated header, bgzipped per default
index
*.{csi,tbi}
Index of VCF with updated header
versions
versions.yml
File containing software versions
Modify header of VCF/BCF files, change sample names.
